Over the past 40 years, all low nutrient lakes in Vermont have approximately doubled in phosphorus (P) concentrations, while oligo- and eutrophic lake ecosystems are stable or decreasing in P. We know that lake chemistry is changing, but know very little about the biological, ecological, and functional response of these systems to long-term shifts. In collaboration with the VT DEC and funding from the USGS Vermont Lake Studies and Water Resources Center, we are using a paleo-diatom data record to identify disturbance gradients and indicator species of ecological change in 103 inland Vermont lakes. In addition, we have conducted the first landscape-scale assessment of dissolved organic matter (DOM) composition and phytoplankton biodiversity across approximately 80 inland lakes over 4 years spanning trophic, land-use, and altitudinal gradients . This information provides insight into how lake biodiversity and carbon processing is changing in response to altered land-water connectivity and climate change pressure.